Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me2

Cell type

Cell type Class
Embryo
Cell type
16-18h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
embryos
Stage
16-18hr embryo
chip-antibody
H3K9me2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Embryos were collected on standard apple juice plate. Before collection, pre-collection for 1hr was performed. Embryos were then collected for 2 hours and aged for 16 hours in 25C. ChIP was performed following standrad modEncode protocol. Library was prepared using NEBNext® Ultra DNA Library Prep Kit for Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 4000

dm6

Number of total reads
11979431
Reads aligned (%)
92.7
Duplicates removed (%)
15.0
Number of peaks
1317 (qval < 1E-05)

dm3

Number of total reads
11979431
Reads aligned (%)
93.3
Duplicates removed (%)
14.2
Number of peaks
2081 (qval < 1E-05)

Base call quality data from DBCLS SRA