Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived hematopoietic cells
NA
NA

Attributes by original data submitter

Sample

source_name
AML_4_10Adherent_1
cell type
iPSC-derived hematopoietic cells
time-point
day 16 of differentiation
harvest
manual separation

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Samples were processed as follows: nuclei were isolated by washing with ATAC buffer (10 mM Tris pH 7.4, 10 mM NaCl, 3 mM MgCl2) and lysing with 50 ul of ATAC lysis buffer (10 mM Tris pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% NP-40). 1ml of ATAC buffer was added to dilute lysis buffer Illumina Nextera DNA Sample Preparation Kit

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
66239445
Reads aligned (%)
78.4
Duplicates removed (%)
38.3
Number of peaks
24066 (qval < 1E-05)

hg19

Number of total reads
66239445
Reads aligned (%)
78.0
Duplicates removed (%)
38.6
Number of peaks
23513 (qval < 1E-05)

Base call quality data from DBCLS SRA