SRX5236193
GSM3557744: ChIP-seq H3K27me3 DNMT1ko 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Neural
Cell type
Fetal neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
fetal-derived neural progenitor cells (sai)
cell type
fetal-derived neural progenitor cells (sai)
viral vector
LV.gRNA.CAS9GFP
grna target
DNMT1 exon 32
chip-antibody
H3K27me3 Anti-trimethyl-Histone H3 (Lys27) Ab Millipore 07-449

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera DNA Library Prep Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35009116
Reads aligned (%)
97.3
Duplicates removed (%)
9.4
Number of peaks
1359 (qval < 1E-05)

hg19

Number of total reads
35009116
Reads aligned (%)
96.6
Duplicates removed (%)
11.2
Number of peaks
1335 (qval < 1E-05)

Base call quality data from DBCLS SRA