SRX5236191
GSM3557742: ChIP-seq pol-II DNMT1ko 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
Fetal neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
fetal-derived neural progenitor cells (sai)
cell type
fetal-derived neural progenitor cells (sai)
viral vector
LV.gRNA.CAS9GFP
grna target
DNMT1 exon 32
chip-antibody
Pol II: RPB2 , N-term cat# GTX102535-S

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera DNA Library Prep Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6739502
Reads aligned (%)
85.3
Duplicates removed (%)
32.4
Number of peaks
711 (qval < 1E-05)

hg19

Number of total reads
6739502
Reads aligned (%)
85.0
Duplicates removed (%)
32.5
Number of peaks
698 (qval < 1E-05)

Base call quality data from DBCLS SRA