SRX5236186
GSM3557737: ChIP-seq H3K27me3 CTR 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Neural
Cell type
Fetal neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
fetal-derived neural progenitor cells (sai)
cell type
fetal-derived neural progenitor cells (sai)
viral vector
LV.gRNA.CAS9GFP
grna target
LacZ
chip-antibody
H3K27me3 Anti-trimethyl-Histone H3 (Lys27) Ab Millipore 07-449

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera DNA Library Prep Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50343460
Reads aligned (%)
96.7
Duplicates removed (%)
15.7
Number of peaks
5313 (qval < 1E-05)

hg19

Number of total reads
50343460
Reads aligned (%)
95.9
Duplicates removed (%)
16.9
Number of peaks
5161 (qval < 1E-05)

Base call quality data from DBCLS SRA