Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
SH-EP
NA
NA

Attributes by original data submitter

Sample

source_name
SH-EP-NMYCER
cell line
SH-EP-NMYCER
treatment
EtOH
treatment2
none
shRNA
shSCR
antibody
RNAPII (A10, Santa Cruz, sc-17798)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
64910882
Reads aligned (%)
79.2
Duplicates removed (%)
25.5
Number of peaks
22526 (qval < 1E-05)

hg19

Number of total reads
64910882
Reads aligned (%)
78.9
Duplicates removed (%)
25.9
Number of peaks
22569 (qval < 1E-05)

Base call quality data from DBCLS SRA