Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Sarcoma cell line
NA
NA

Attributes by original data submitter

Sample

source_name
G1297 cell line
cell line
G1297
treatment
Doxycycline (0.2µg/ml)
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibodies; anti-HA mouse monoclonal antibody, Nacalai cat# 06340-54; anti-H3K27ac mouse monoclonal antibody, Wako MABI0309. Libraries were prepared according to the manual of Illumina's Trueseq ChIP sample prep kit set A (Part# IP-202-1012).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
22108435
Reads aligned (%)
96.4
Duplicates removed (%)
28.7
Number of peaks
184 (qval < 1E-05)

mm9

Number of total reads
22108435
Reads aligned (%)
96.3
Duplicates removed (%)
28.8
Number of peaks
149 (qval < 1E-05)

Base call quality data from DBCLS SRA