SRX5235209
IRF9 ChIP-seq analysis of IFNB-stimulated CD8+ dendritic cells (90 min)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

breed
CD8-positive dendritic cell line
age
not applicable
sex
not applicable
tissue
dendritic cells from the spleen
cell_line
MutuDC1940
cell_type
CD8-positive dendritic cell line

Sequenced DNA Library

library_name
mm_DC_IFNB_ChIPseq_IRF9_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19915377
Reads aligned (%)
97.1
Duplicates removed (%)
14.7
Number of peaks
21281 (qval < 1E-05)

mm9

Number of total reads
19915377
Reads aligned (%)
97.0
Duplicates removed (%)
14.7
Number of peaks
21263 (qval < 1E-05)

Base call quality data from DBCLS SRA