SRX5231267
GSM3554297: E16WTb; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Kidneys
develomental stage
E16.5
genotype
Six2-GFP::CreTg
strain
129 * C57BL/6

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Corces et al., 2017 Buenrostro et al., 2013 Omni-ATAC

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50640199
Reads aligned (%)
95.0
Duplicates removed (%)
12.3
Number of peaks
97978 (qval < 1E-05)

mm9

Number of total reads
50640199
Reads aligned (%)
94.9
Duplicates removed (%)
12.3
Number of peaks
98377 (qval < 1E-05)

Base call quality data from DBCLS SRA