Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse embryonic fibroblasts
cell type
cells overexprssing EZHIP
antibody
H2K27me3 (Cell signaling C36B11)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% PFA for 5 min. Lysed in (15 mM Tris, 1 mM CaCl2, 0.25% TritonX-100), treated with Mnase to genrate mono-nucleosomes. Chromatin was dialyzed against RIPA buffer (10mM Tris, 1% TritonX-100, 0.1% SDS, 0.1% Na-DOC) and supernatant was incubated with antibody overnight. Antibody was caputred using dynabeads for 3 hours. IPed material was eluted by boiling the beads in 1% SDS buffer at 65 degree C, after washing 5 times. Libraries were constructed according to NEB Next Ultra protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
46657267
Reads aligned (%)
94.3
Duplicates removed (%)
12.0
Number of peaks
281 (qval < 1E-05)

mm9

Number of total reads
46657267
Reads aligned (%)
94.2
Duplicates removed (%)
12.0
Number of peaks
297 (qval < 1E-05)

Base call quality data from DBCLS SRA