SRX5202778
ChIP-seq of V6.5 SHC Input in mESC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6 (female) x 129/S (male)
isolate
not applicable
breed
not applicable
cultivar
not applicable
ecotype
not applicable
age
not applicable
dev_stage
not applicable
sex
male
tissue
embryonic stem cells
cell_line
V6.5
cell_type
murine embryonic stem cells

Sequenced DNA Library

library_name
CME381
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16487530
Reads aligned (%)
97.9
Duplicates removed (%)
16.6
Number of peaks
283 (qval < 1E-05)

mm9

Number of total reads
16487530
Reads aligned (%)
97.7
Duplicates removed (%)
16.7
Number of peaks
240 (qval < 1E-05)

Base call quality data from DBCLS SRA