Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
Murine cell line
antibody
H3K4me3
strain
C57BL/6
tissue
Lung
cell line
KPG
genotype
KrasG12D p53-/- Gata6-/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde. Pellet was resuspended in complete sonication buffer (20mM Tris pH 8.0, 2mM EDTA, 0.5mM EGTA, 1x protease inhibitors (Roche), 0.5% SDS and 0.5mM PMSF) in 1mL for 1x108 cells DNA libraries were prepared using ThruPlex Kit

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
49101239
Reads aligned (%)
84.6
Duplicates removed (%)
14.2
Number of peaks
23529 (qval < 1E-05)

mm9

Number of total reads
49101239
Reads aligned (%)
84.5
Duplicates removed (%)
14.2
Number of peaks
23491 (qval < 1E-05)

Base call quality data from DBCLS SRA