Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
T cell
strain
C57BL/6
genotype
wild-type
tissue
mediastinal Lymph node
cell type
CD4+ T cell
cell subset
TFH

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
OTII (CD45.1+) cells were adoptively transferred into WT (C57Bl/6) and Il6-/- recipient mice. One day later, recipient mice were infected with PR8-OTII. Seven days after infection, 30,000 donor-derived CD45.1+CXCR5hiSLAMloCD4+CD19- TFH and CD45.1+CXCR5loSLAMhi CD4+CD19- Teff cells were sorted from the mLN of WT and Il6-/- recipient mice. Nextera primers were used for library amplification.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
53939336
Reads aligned (%)
83.7
Duplicates removed (%)
53.9
Number of peaks
21736 (qval < 1E-05)

mm9

Number of total reads
53939336
Reads aligned (%)
83.6
Duplicates removed (%)
53.9
Number of peaks
21686 (qval < 1E-05)

Base call quality data from DBCLS SRA