Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSCs
cell type
iPSCs
treatment
CBP-30
donor
1
chip antibody
H3K27ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
23344393
Reads aligned (%)
86.4
Duplicates removed (%)
3.7
Number of peaks
46725 (qval < 1E-05)

hg19

Number of total reads
23344393
Reads aligned (%)
86.2
Duplicates removed (%)
3.7
Number of peaks
46601 (qval < 1E-05)

Base call quality data from DBCLS SRA