Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Lens fiber
NA
NA

Attributes by original data submitter

Sample

source_name
lens fiber
strain
CD1
tissue
lens
developmental stage
E14.5

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
After cell dissociation using freshly microdissected lens epithelium and fiber, the nuclei were extracted using cell lysis buffer The ATAC-seq libraries were prepared using standard ATAC-seq protocols as described by Buenrostro JD et al 2013 Nature Methods

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
29662517
Reads aligned (%)
96.8
Duplicates removed (%)
16.4
Number of peaks
34788 (qval < 1E-05)

mm9

Number of total reads
29662517
Reads aligned (%)
96.8
Duplicates removed (%)
16.4
Number of peaks
34253 (qval < 1E-05)

Base call quality data from DBCLS SRA