Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver tissue
strain
C57BL/6
Sex
male
library type
none
diet
low fat diet

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
79281272
Reads aligned (%)
97.4
Duplicates removed (%)
27.7
Number of peaks
285 (qval < 1E-05)

mm9

Number of total reads
79281272
Reads aligned (%)
97.2
Duplicates removed (%)
28.5
Number of peaks
287 (qval < 1E-05)

Base call quality data from DBCLS SRA