Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
Myometrial tissue
NA
NA

Attributes by original data submitter

Sample

source_name
myometrial tissue
strain
Bl6
genotype
wild type
passage
Term labour
antibody
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was isolated using Trizol (Life Technologies) and DNase treated prior to library construction; genomic DNA was isolated using ChIP protocol prior to library construction RNA and ChIP libraries were prepared for sequencing using standard Illumina HiSeq 2500 protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
14352670
Reads aligned (%)
98.4
Duplicates removed (%)
20.4
Number of peaks
14212 (qval < 1E-05)

mm9

Number of total reads
14352670
Reads aligned (%)
98.0
Duplicates removed (%)
20.5
Number of peaks
14247 (qval < 1E-05)

Base call quality data from DBCLS SRA