Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Brain cortex
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6J SJL
isolate
pool of 5 mouse
age
P51
sex
female
tissue
Brain cortex
birth_date
2011
birth_location
PRBB - Barcelona
cell_subtype
Homogenate
cell_type
Homogenate
sample_type
Replicate 3
treatment
EE + EGCG

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
56016074
Reads aligned (%)
97.9
Duplicates removed (%)
25.6
Number of peaks
177252 (qval < 1E-05)

mm9

Number of total reads
56016074
Reads aligned (%)
97.7
Duplicates removed (%)
25.6
Number of peaks
176779 (qval < 1E-05)

Base call quality data from DBCLS SRA