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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Brain cortex
ATCC
MeSH
RIKEN BRC
SRX5175329
H3K79me2 of mus musculus : P51 female cortex homogenate
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Neural
Cell type
Brain cortex
NA
NA
Attributes by original data submitter
Sample
strain
C57BL/6J SJL
isolate
pool of 5 mouse
age
P51
sex
female
tissue
Brain cortex
birth_date
2011
birth_location
PRBB - Barcelona
cell_subtype
Homogenate
cell_type
Homogenate
sample_type
Replicate 4
treatment
EE + EGCG
Sequenced DNA Library
library_name
K79me2_WET3_7527_GTCCGC.fastq.gz
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
46996878
Reads aligned (%)
97.3
Duplicates removed (%)
34.3
Number of peaks
128393 (qval < 1E-05)
mm9
Number of total reads
46996878
Reads aligned (%)
96.9
Duplicates removed (%)
34.2
Number of peaks
128171 (qval < 1E-05)
Base call quality data from
DBCLS SRA