SRX5171868
GSM3525974: T-ALL leukemia [Tumor69]; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL tumor
tissue
Hematologic malignancy
cell type
T-ALL leukemia

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Library amplificiation with NEBNext High-Fidelity 2 698 PCR Master Mix (NEB M0541) and custom primer indexes.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
94758980
Reads aligned (%)
47.9
Duplicates removed (%)
19.6
Number of peaks
48340 (qval < 1E-05)

hg19

Number of total reads
94758980
Reads aligned (%)
47.7
Duplicates removed (%)
19.8
Number of peaks
48072 (qval < 1E-05)

Base call quality data from DBCLS SRA