ChIP-Atlas: SRX5170186

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: F1 2-1 129/Castaneus Female mESCs
cell line: embryonic stem cell
protocol: H3K27ac ChIP-seq
treatment: Control clonal cell line isolated during genome engineering experiments (see Engreitz et al. Nature 2016)

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: ChIP-Seq: We performed ChIP-Seq as described in Busby M et al. Epigenomics & Chromatin (2016)

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 13916625
Reads aligned (%): 96.9
Duplicates removed (%): 44.6
Number of peaks: 6125 (qval < 1E-05)

mm9

Number of total reads: 13916625
Reads aligned (%): 96.8
Duplicates removed (%): 44.9
Number of peaks: 6138 (qval < 1E-05)

Base call quality data from DBCLS SRA