SRX5146748
GSM3518657: F Tbx5 fb1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

source_name
dissected E12.5 mouse ventricle
strain
mixed
tissue
dissected E12.5 mouse ventricle
Stage
embryonic
chip antibdoy
M280 Streptavidin Dynabeads

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was homogenized and crosslinked for 30', RT in 1% formaldehyde/1XPBS, quenched with 500mM glycine 5', RT and washed multiple times with 1XPBS. KAPA HiFi Hyperprep library construction

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19391650
Reads aligned (%)
82.8
Duplicates removed (%)
34.3
Number of peaks
12540 (qval < 1E-05)

mm9

Number of total reads
19391650
Reads aligned (%)
82.6
Duplicates removed (%)
34.4
Number of peaks
12528 (qval < 1E-05)

Base call quality data from DBCLS SRA