Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

source_name
dissected E12.5 mouse ventricle
strain
mixed
tissue
dissected E12.5 mouse ventricle
Stage
embryonic
chip antibdoy
M280 Streptavidin Dynabeads

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was homogenized and crosslinked for 30', RT in 1% formaldehyde/1XPBS, quenched with 500mM glycine 5', RT and washed multiple times with 1XPBS. KAPA HiFi Hyperprep library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17727668
Reads aligned (%)
92.1
Duplicates removed (%)
25.5
Number of peaks
7967 (qval < 1E-05)

mm9

Number of total reads
17727668
Reads aligned (%)
91.9
Duplicates removed (%)
25.6
Number of peaks
7996 (qval < 1E-05)

Base call quality data from DBCLS SRA