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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Embryonic heart
ATCC
MeSH
RIKEN BRC
SRX5146742
GSM3518651: F Nkx25 fb2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA
Attributes by original data submitter
Sample
source_name
dissected E12.5 mouse ventricle
strain
mixed
tissue
dissected E12.5 mouse ventricle
Stage
embryonic
chip antibdoy
M280 Streptavidin Dynabeads
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was homogenized and crosslinked for 30', RT in 1% formaldehyde/1XPBS, quenched with 500mM glycine 5', RT and washed multiple times with 1XPBS. KAPA HiFi Hyperprep library construction
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
17727668
Reads aligned (%)
92.1
Duplicates removed (%)
25.5
Number of peaks
7967 (qval < 1E-05)
mm9
Number of total reads
17727668
Reads aligned (%)
91.9
Duplicates removed (%)
25.6
Number of peaks
7996 (qval < 1E-05)
Base call quality data from
DBCLS SRA