Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Liver
Cell type
BWTG3
NA
NA

Attributes by original data submitter

Sample

source_name
BWTG3 cell line
cell type
mouse hepatoma derived cells
chip antibody
rabbit anti-GR antibody; Santa Cruz Biotechnolgoy, sc-8992

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitation (IP) was performed on 100μl lysates diluted 1:3 in incubation buffer.Immunoprecipitated material was collected the next day by centrifugation and washed once each with WBI, WBII, LiCl buffer, and twice with EDTA/HEPES buffer (0.5M EDTA and 1M HEPES) using spin columns with 0.35μM pore size filters (MoBiTec).The recovered DNA was purified by the PCR purification kit (Qiagen) according to the manufacturer's protocol, eluting in 50μl of Qiagen Elution buffer RNA libraries were prepared for sequencing using standard Illumina protocols (truseq)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
68830472
Reads aligned (%)
97.2
Duplicates removed (%)
13.1
Number of peaks
4317 (qval < 1E-05)

mm9

Number of total reads
68830472
Reads aligned (%)
97.0
Duplicates removed (%)
13.1
Number of peaks
4385 (qval < 1E-05)

Base call quality data from DBCLS SRA