Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Zfp57

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells
strain
C57BL/6J
tissue
ES cells
genotype
WT
Sex
male
antibody
ZFP57 (Abcam, ab45341, lot 754226)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using tale lysis buffer (50mM Tris-Cl pH8.5; 5mM EDTA; 200mM Nacl; 0.25% SDS) and 1 µg/ml Proteinase K for 1 hr. The mixture was purified with phenol/chloroform extraction and precipitated with isopropanol. Paired-end libraries were prepared and sequenced in 100bp reads run according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
18194110
Reads aligned (%)
98.5
Duplicates removed (%)
16.8
Number of peaks
844 (qval < 1E-05)

mm9

Number of total reads
18194110
Reads aligned (%)
98.3
Duplicates removed (%)
17.0
Number of peaks
811 (qval < 1E-05)

Base call quality data from DBCLS SRA