Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat
cell type
Jurkat

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were trypsinized and single cell suspensions were harvested for STAR Scripts run using C1 Fluidigm Open App chips (10-17um). The open chromatin was transposed by Tn5 transposase. Cell specific barcode was integrated to tagmented DNA of each cell by PCR amplification with indexed primer. The amplified PCR produced was purified by Ampure XP beads and the purified ATACseq library was sent for sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
5466854
Reads aligned (%)
97.5
Duplicates removed (%)
84.4
Number of peaks
4 (qval < 1E-05)

hg19

Number of total reads
5466854
Reads aligned (%)
96.9
Duplicates removed (%)
84.7
Number of peaks
5 (qval < 1E-05)

Base call quality data from DBCLS SRA