Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Muscle
Cell type
Muscle satellite cells
NA
NA

Attributes by original data submitter

Sample

source_name
Muscle stem (satellite) cells_Lmna Δ8-11 +/+
strain background
C57BL/6J
genotype/variation
Lmna {delta}8-11 +/+
age
Post natal day 19
cell type
Muscle stem (satellite) cells
chip antibody
H3K4me3 (Millipore 07-473)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
cell extraction protocol: Satellite cells were isolated from hind-limb muscle and fixed before sorting using FACS Cells were sonicated and for spike-in experiments a 5% of sheared drosophila chromatin was added to each sample. Satellite cells from pools of 6-9 mice per genotype were used DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
124021374
Reads aligned (%)
79.5
Duplicates removed (%)
56.9
Number of peaks
33831 (qval < 1E-05)

mm9

Number of total reads
124021374
Reads aligned (%)
79.3
Duplicates removed (%)
56.9
Number of peaks
33849 (qval < 1E-05)

Base call quality data from DBCLS SRA