Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
Muscle satellite cells
NA
NA

Attributes by original data submitter

Sample

source_name
Muscle stem (satellite) cells_Lmna Δ8-11 -/-
strain background
C57BL/6J
genotype/variation
Lmna {delta}8-11 -/-
age
Post natal day 19
cell type
Muscle stem (satellite) cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
cell extraction protocol: Satellite cells were isolated from hind-limb muscle and fixed before sorting using FACS Cells were sonicated and for spike-in experiments a 5% of sheared drosophila chromatin was added to each sample. Satellite cells from pools of 6-9 mice per genotype were used DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
138620658
Reads aligned (%)
90.7
Duplicates removed (%)
20.1
Number of peaks
798 (qval < 1E-05)

mm9

Number of total reads
138620658
Reads aligned (%)
90.4
Duplicates removed (%)
19.9
Number of peaks
943 (qval < 1E-05)

Base call quality data from DBCLS SRA