SRX5099802
GSM3502714: Human islet cytokine-treated rep HI24; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Human pancreatic islets
treatment
IFN-γ + IL-1[beta] 48h
cell type
Human pancreatic islets

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei from 50,000 cells were isolated and then lysed to extract DNA. ATAC-seq libraries were prepared using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
139908626
Reads aligned (%)
98.2
Duplicates removed (%)
43.2
Number of peaks
127635 (qval < 1E-05)

hg19

Number of total reads
139908626
Reads aligned (%)
97.9
Duplicates removed (%)
43.6
Number of peaks
127482 (qval < 1E-05)

Base call quality data from DBCLS SRA