SRX5099789
GSM3502704: EndoC-βH1 control rep 2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pancreas
Cell type
EndoC-BH1
NA
NA

Attributes by original data submitter

Sample

source_name
EndoC-βH1
treatment
Control
cell type
EndoC-[beta]H1

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei from 50,000 cells were isolated and then lysed to extract DNA. ATAC-seq libraries were prepared using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
108217593
Reads aligned (%)
85.3
Duplicates removed (%)
62.0
Number of peaks
44049 (qval < 1E-05)

hg19

Number of total reads
108217593
Reads aligned (%)
85.1
Duplicates removed (%)
62.6
Number of peaks
43718 (qval < 1E-05)

Base call quality data from DBCLS SRA