Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT3

Cell type

Cell type Class
Blood
Cell type
TMD8
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
ABC DLBCL cell line (TMD8)
antibody
pSTAT3
agent
DMSO
cell line
ABC DLBCL cell line (TMD8)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments are followed by Rui et al., 2016, PNAS 113(46): E7260-E7267 ChIP library was construbuted by using the Ovation Ultralow Library Kit (NuGen, Part No. 0330)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
28236809
Reads aligned (%)
33.6
Duplicates removed (%)
62.3
Number of peaks
3360 (qval < 1E-05)

hg38

Number of total reads
28236809
Reads aligned (%)
35.0
Duplicates removed (%)
61.0
Number of peaks
3447 (qval < 1E-05)

Base call quality data from DBCLS SRA