Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
treatment
10nM DHT 4 hours

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
50k cells in biological duplicate were submitted to Center for Functional Cancer Epigenetics at Dana Farber research institute for ATAC library preparation using the Omni ATAC protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
47831264
Reads aligned (%)
92.2
Duplicates removed (%)
73.0
Number of peaks
5385 (qval < 1E-05)

hg19

Number of total reads
47831264
Reads aligned (%)
91.9
Duplicates removed (%)
73.2
Number of peaks
5315 (qval < 1E-05)

Base call quality data from DBCLS SRA