Antigen

Antigen Class

TFs and others

Antigen

EZH2

Cell type

Cell type Class

Prostate

Cell type

PC-3

Primary Tissue

Prostate

Tissue Diagnosis

Adenocarcinoma

Sample

dev stage

adult

cell line

PC-3

sex

male

sample type

immortalized cell line

donor ID

ENCDO349AAA

age

62 year

health state

grade IV, adenocarcinoma

passage number

3

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

68305015

Reads aligned (%)

96.7

Duplicates removed (%)

12.2

Number of peaks

1061 (qval < 1E-05)

hg19

Number of total reads

68305015

Reads aligned (%)

95.9

Duplicates removed (%)

13.5

Number of peaks

1233 (qval < 1E-05)