Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCB1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
SNF5 ChIP-seq 4-hydroxy Tamoxifen
cell line
MCF7
cell type
ER+ Breast Cancer Cell Line
passages
20-35
treatment
100 nM 4-hydroxy tamoxifen for 6 hours
chip antibody
Bethyl A301-087A

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
32400417
Reads aligned (%)
55.9
Duplicates removed (%)
43.3
Number of peaks
16706 (qval < 1E-05)

hg38

Number of total reads
32400417
Reads aligned (%)
56.7
Duplicates removed (%)
42.7
Number of peaks
16532 (qval < 1E-05)

Base call quality data from DBCLS SRA