SRX5084443
GSM3497961: WT h3k27me3 rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 Embryonic Stem Cells
strain
12910la
genotype
wild-type
cell type
E14 Embryonic Stem Cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were prepared according to Illumina instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19773071
Reads aligned (%)
98.0
Duplicates removed (%)
6.6
Number of peaks
3055 (qval < 1E-05)

mm9

Number of total reads
19773071
Reads aligned (%)
97.9
Duplicates removed (%)
6.8
Number of peaks
3075 (qval < 1E-05)

Base call quality data from DBCLS SRA