Antigen

Antigen Class

Bisulfite-Seq

Antigen

Bisulfite-Seq

Cell type

Cell type Class

Liver

Cell type

Carcinoma, Hepatocellular

MeSH Description

A primary malignant neoplasm of epithelial liver cells. It ranges from a well-differentiated tumor with EPITHELIAL CELLS indistinguishable from normal HEPATOCYTES to a poorly differentiated neoplasm. The cells may be uniform or markedly pleomorphic, or form GIANT CELLS. Several classification schemes have been suggested.

Sample

source_name

FACS sorted cells from adult liver

strain

C57/B6

tissue

Adult DDC damaged liver

gender

male

Sequenced DNA Library

library_strategy

Bisulfite-Seq

library_source

GENOMIC

library_selection

RANDOM

library_construction_protocol

DNA extraction (see methods) WGBS (see methods)

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

154038361

Reads aligned (%)

89.0

Coverage rate (×)

4.5

Number of hyper MRs

302984 (qval < 1E-05)

mm9

Number of total reads

154038361

Reads aligned (%)

90.5

Coverage rate (×)

4.4

Number of hyper MRs

302440 (qval < 1E-05)