Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

isolate
4638
age
70
biomaterial_provider
University Hospital Hiroshima
sex
male
tissue
liver
disease
Chronic HCV
disease_stage
F1/A1
sample_type
tissue sample
treatment
Peg-IFN

Sequenced DNA Library

library_name
4638
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
53939417
Reads aligned (%)
96.0
Duplicates removed (%)
16.9
Number of peaks
12867 (qval < 1E-05)

hg19

Number of total reads
53939417
Reads aligned (%)
95.4
Duplicates removed (%)
17.8
Number of peaks
12710 (qval < 1E-05)

Base call quality data from DBCLS SRA