Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

isolate
HCC-R-016-00
age
54
biomaterial_provider
University Hospital Reims
sex
male
tissue
liver
disease
Chronic HCV
disease_stage
F4/A1
sample_type
tissue sample
treatment
Relapse from SOF/DCV/RBV

Sequenced DNA Library

library_name
HCC-R-016-00
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
59861534
Reads aligned (%)
98.2
Duplicates removed (%)
18.1
Number of peaks
11631 (qval < 1E-05)

hg19

Number of total reads
59861534
Reads aligned (%)
97.4
Duplicates removed (%)
18.8
Number of peaks
11484 (qval < 1E-05)

Base call quality data from DBCLS SRA