ChIP-Atlas: SRX5054337

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: embryonic stem cells
cell type: embryonic stem cells
culture conditions: 2i+LIF
strain: 129/Ola
chip antibody: input
genotype/variation: Mta3-FLAG knocked in to the endogenous Mta3 locus

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Chromatin immunoprecipitations were carried out as previously outlined (Reynolds et al., 2012). ChIP-seq libraries were prepared using the NEXTflex Rapid DNA-seq kit (Illumina)

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 78231120
Reads aligned (%): 97.9
Duplicates removed (%): 14.1
Number of peaks: 580 (qval < 1E-05)

mm9

Number of total reads: 78231120
Reads aligned (%): 97.7
Duplicates removed (%): 14.0
Number of peaks: 657 (qval < 1E-05)

Base call quality data from DBCLS SRA