SRX5036609
GSM3484775: Nf1-KO [ATAC-seq]; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Dorsal root ganglia
NA
NA

Attributes by original data submitter

Sample

source_name
DRG
strain background
C57BL/6-I129
genotype/variation
EGFP+ Nf1fl/fl;DhhCre DRG
tissue
Dorsal root ganglion (DRG)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18240343
Reads aligned (%)
84.8
Duplicates removed (%)
18.0
Number of peaks
41982 (qval < 1E-05)

mm9

Number of total reads
18240343
Reads aligned (%)
84.7
Duplicates removed (%)
18.0
Number of peaks
40109 (qval < 1E-05)

Base call quality data from DBCLS SRA