Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
Coronary artery smooth muscle
NA
NA

Attributes by original data submitter

Sample

source_name
coronary artery smooth muscle cells
cell type
coronary artery smooth muscle cells
lines
1508
passage
4-7
genotype/variation
TCF21 knockdown

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
122098918
Reads aligned (%)
69.1
Duplicates removed (%)
8.2
Number of peaks
25660 (qval < 1E-05)

hg19

Number of total reads
122098918
Reads aligned (%)
68.5
Duplicates removed (%)
8.6
Number of peaks
24593 (qval < 1E-05)

Base call quality data from DBCLS SRA