Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCB1

Cell type

Cell type Class
Liver
Cell type
SK-HEP-1
Primary Tissue
Liver
Site of Extraction
Ascites
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
SK-Hep1 cell line
cell line
SK-Hep1
cell type
Human hepatic adenocarcinoma cell line
chip antibody
SMARCB1 (abcam #12167)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
17140775
Reads aligned (%)
82.1
Duplicates removed (%)
25.8
Number of peaks
463 (qval < 1E-05)

hg19

Number of total reads
17140775
Reads aligned (%)
81.5
Duplicates removed (%)
26.2
Number of peaks
295 (qval < 1E-05)

Base call quality data from DBCLS SRA