SRX5012068
GSM3475290: Adjacent healthy tissue 2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

source_name
Adjacent healthy tissue
cell type
primary cells
tissue
colon
disease state
colorectal adenocarcinoma

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP 40 lysis

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9533185
Reads aligned (%)
98.3
Duplicates removed (%)
24.2
Number of peaks
5688 (qval < 1E-05)

hg19

Number of total reads
9533185
Reads aligned (%)
97.7
Duplicates removed (%)
24.6
Number of peaks
5643 (qval < 1E-05)

Base call quality data from DBCLS SRA