SRX5008388
GSM3473664: CD94+CD56dim1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
blood
population
CD94+CD56dim
cell type
PBMCs
tissue
blood

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
CD94-CD56dim, CD94+CD56dim and CD94+CD56hi NK cells were sorted then subject to ATAC-Seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62007281
Reads aligned (%)
99.0
Duplicates removed (%)
30.1
Number of peaks
59082 (qval < 1E-05)

hg19

Number of total reads
62007281
Reads aligned (%)
98.8
Duplicates removed (%)
30.3
Number of peaks
58902 (qval < 1E-05)

Base call quality data from DBCLS SRA