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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Suz12
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
SRX5006196
GSM3467347: Suz12gRNA Suz12; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Suz12
Cell type
Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
source_name
spleen
strain
C57BL/6
antibody
Suz12
extra protocol
ChIPmentation (see De Bock et al 2018; Vanden Bemtp et al 2018)
genotype/variation
Suz12 inactivated - CD4+/CD8+ DP
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
all libraries were prepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
40105206
Reads aligned (%)
98.1
Duplicates removed (%)
20.3
Number of peaks
498 (qval < 1E-05)
mm9
Number of total reads
40105206
Reads aligned (%)
97.9
Duplicates removed (%)
20.3
Number of peaks
507 (qval < 1E-05)
Base call quality data from
DBCLS SRA