Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
KO MEF_IP
cell type
primary mouse embryonic fibroblasts
strain
C57BL/6
h3k4me1 chip antibody
ab8895, abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with formaldehyde and nuclear DNA was sonicated with 200-300bp, then the H3K4me1-DNA complexes were isolated with antibody. ChIP DNA libraries were made following Illumina ChIP-Seq library preparation kit and subjected to Solexa sequencing (Illumina) at the CCR-Sequencing Facility, National Cancer Institute. Sequencing was performed on Illumina Genome Analyzer IIx.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
56324524
Reads aligned (%)
92.5
Duplicates removed (%)
29.6
Number of peaks
32676 (qval < 1E-05)

mm9

Number of total reads
56324524
Reads aligned (%)
92.3
Duplicates removed (%)
29.6
Number of peaks
32514 (qval < 1E-05)

Base call quality data from DBCLS SRA