Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
induced pluripotent stem cell line
tissue
induced pluripotent stem cell line
Sex
female

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 transposition of nuclear DNA for 30 minutes followed by clean up with Qiagen Min Elute columns Sequencing libraries were constructed using a modified version of the Illumina Nextera DNA Sample prep kit, using 200,000 cells per pellet

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
118967206
Reads aligned (%)
97.3
Duplicates removed (%)
78.9
Number of peaks
31251 (qval < 1E-05)

hg19

Number of total reads
118967206
Reads aligned (%)
97.0
Duplicates removed (%)
79.3
Number of peaks
31089 (qval < 1E-05)

Base call quality data from DBCLS SRA