Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Naive B cells
NA
NA

Attributes by original data submitter

Sample

source_name
naive FO B cell
cell type
naive FO B cell
strain
C57BL/6
genotype
MD4 BCR-tg Cd23-cre Ikzf1(fl/fl)
cell preparation
Ex-vivo FACS-sorted
cell sorting strategy
FACS-sorted
chip antibody
n.a.

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
phenol-chloroform extraction of genomic DNA

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
30963266
Reads aligned (%)
76.7
Duplicates removed (%)
27.4
Number of peaks
33661 (qval < 1E-05)

mm9

Number of total reads
30963266
Reads aligned (%)
76.5
Duplicates removed (%)
27.5
Number of peaks
33585 (qval < 1E-05)

Base call quality data from DBCLS SRA