ChIP-Atlas: SRX4995943

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Blood
Cell type: Naive B cells
NA: NA

Attributes by original data submitter

Sample

source_name: naive FO B cell
cell type: naive FO B cell
strain: C57BL/6
genotype: MD4 BCR-tg Ikzf1(fl/fl)
cell preparation: Ex-vivo FACS-sorted
cell sorting strategy: FACS-sorted
chip antibody: n.a.

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: phenol-chloroform extraction of genomic DNA

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 29806590
Reads aligned (%): 72.0
Duplicates removed (%): 28.5
Number of peaks: 27994 (qval < 1E-05)

mm9

Number of total reads: 29806590
Reads aligned (%): 71.8
Duplicates removed (%): 28.6
Number of peaks: 27978 (qval < 1E-05)

Base call quality data from DBCLS SRA