Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3 cells
protocol
ATAC-seq
enzyme
Transposase-Tn5
cell type
Human adenocarcinoma cells
cell line
HeLa-S3 (CCL-2.2)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
For each ATAC-seq library, 50,000 cells or the equivalent in mitotic chromatin clusters were used ATAC-seq was performed according to published protocol (Buenrostro et al, Curr. Protoc. Mol. Bio, 2015)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
55413380
Reads aligned (%)
92.1
Duplicates removed (%)
64.4
Number of peaks
1504 (qval < 1E-05)

hg19

Number of total reads
55413380
Reads aligned (%)
91.8
Duplicates removed (%)
64.7
Number of peaks
1416 (qval < 1E-05)

Base call quality data from DBCLS SRA